protected boolean |
AnnotateVcfDb.findDbExists(QueryResult qr) |
Should we annotate using 'exists' field?
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protected void |
AnnotateVcfDb.findDbId(java.util.Set<java.lang.String> idSet,
QueryResult qr) |
Find an ID for this variant and add them to idSet
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protected java.lang.String |
AnnotateVcfDb.findDbInfo(java.lang.String infoFieldName,
QueryResult qr) |
Find all non-empty INFO fields 'infoFieldName' in results
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protected void |
AnnotateVcfDb.findDbInfo(java.util.Map<java.lang.String,java.lang.String> info,
QueryResult qr) |
Find INFO fields for this VCF entry
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protected java.lang.String |
AnnotateVcfDb.findDbInfoAlt(java.lang.String infoFieldName,
QueryResult qr) |
Find the first non-empty INFO field 'infoFieldName' in results
Note: ALT must match
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