Package org.snpsift.testCases.unit
Class TestCasesFilterChrPos
- java.lang.Object
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- org.snpsift.testCases.unit.TestCasesFilterChrPos
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public class TestCasesFilterChrPos extends java.lang.Object
Test cases for SnpSift filterChrPos- Author:
- pcingola
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Field Summary
Fields Modifier and Type Field Description static boolean
debug
protected java.lang.String[]
defaultExtraArgs
static boolean
verbose
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Constructor Summary
Constructors Constructor Description TestCasesFilterChrPos()
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description protected java.lang.String[]
argsList(java.lang.String chrPosFileName, java.lang.String vcfFileName, java.lang.String[] extraArgs)
void
filter(java.lang.String dbFileName, java.lang.String fileName, int expectedCount)
java.util.List<org.snpeff.vcf.VcfEntry>
filter(java.lang.String chrPosFileName, java.lang.String vcfFileName, java.lang.String[] extraArgs, int expectedCount)
Filtervoid
test_01()
void
test_02()
void
test_03()
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Method Detail
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argsList
protected java.lang.String[] argsList(java.lang.String chrPosFileName, java.lang.String vcfFileName, java.lang.String[] extraArgs)
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filter
public void filter(java.lang.String dbFileName, java.lang.String fileName, int expectedCount)
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filter
public java.util.List<org.snpeff.vcf.VcfEntry> filter(java.lang.String chrPosFileName, java.lang.String vcfFileName, java.lang.String[] extraArgs, int expectedCount)
Filter
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test_01
public void test_01()
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test_02
public void test_02()
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test_03
public void test_03()
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