Class GwasCatalogEntry


  • public class GwasCatalogEntry
    extends java.lang.Object
    Entry from a GWAS-catalog References: http://www.genome.gov/gwastudies/#download http://www.genome.gov/Pages/About/OD/OPG/GWAS%20Catalog/Tab_delimited_column_descriptions_09_27.pdf
    Author:
    pablocingolani
    • Field Detail

      • dateAddedtoCatalog

        public java.lang.String dateAddedtoCatalog
      • pubmedId

        public java.lang.String pubmedId
      • firstAuthor

        public java.lang.String firstAuthor
      • date

        public java.lang.String date
      • journal

        public java.lang.String journal
      • link

        public java.lang.String link
      • study

        public java.lang.String study
      • trait

        public java.lang.String trait
      • initialSampleSize

        public java.lang.String initialSampleSize
      • replicationSampleSize

        public java.lang.String replicationSampleSize
      • region

        public java.lang.String region
      • chrId

        public java.lang.String chrId
      • chrPos

        public int chrPos
      • reportedGene

        public java.lang.String reportedGene
      • mappedGene

        public java.lang.String mappedGene
      • upstreamGeneId

        public java.lang.String upstreamGeneId
      • downstreamGeneId

        public java.lang.String downstreamGeneId
      • snpGeneIds

        public java.lang.String snpGeneIds
      • upstreamGeneDistance

        public java.lang.String upstreamGeneDistance
      • downstreamGeneDistance

        public java.lang.String downstreamGeneDistance
      • riskAllele

        public java.lang.String riskAllele
      • snps

        public java.lang.String snps
      • merged

        public java.lang.String merged
      • snpIdCurrent

        public java.lang.String snpIdCurrent
      • context

        public java.lang.String context
      • intergenic

        public java.lang.String intergenic
      • riskAlleleFrequency

        public java.lang.String riskAlleleFrequency
      • pValue

        public double pValue
      • pValueMlog

        public java.lang.String pValueMlog
      • pValueText

        public java.lang.String pValueText
      • orBeta

        public java.lang.String orBeta
      • ci95

        public java.lang.String ci95
      • platform

        public java.lang.String platform
      • cnv

        public java.lang.String cnv
      • mappedTrait

        public java.lang.String mappedTrait
      • mappedTraitUri

        public java.lang.String mappedTraitUri
    • Constructor Detail

      • GwasCatalogEntry

        public GwasCatalogEntry()
    • Method Detail

      • getTraitCode

        public java.lang.String getTraitCode()
        Trait as a 'code' (only alpha-num chars)
      • toString

        public java.lang.String toString()
        Overrides:
        toString in class java.lang.Object