AnnotateVcfDb |
Annotate using a VCF "database"
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DbMarker |
Use a file as a 'marker' database.
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DbVcf |
Use a VCF file as a database for annotations
A VCF database consists of a VCF file and an index.
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MarkerFile |
Represents a marker in a file (located at 'fileIdx' bytes since the beginning of the file)
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QueryResult |
A database query and a result.
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VcfIndexDataChromo |
Represents a set of VCF entries stored in an (uncompressed) file
All entries belong to the same chromosome
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VcfIndexTree |
Interval tree structure for an 'VcfIndexChromo'
The whole tree is stored in a single class as a set of arrays.
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