Class FieldLof

  • Direct Known Subclasses:
    FieldNmd

    public class FieldLof
    extends FieldSub
    A LOF field form SnpEff: E.g.: 'LOF[2].GENE'
    Author:
    pablocingolani
    • Constructor Detail

      • FieldLof

        public FieldLof​(java.lang.String name,
                        Expression indexExpr)
    • Method Detail

      • getFieldString

        public java.lang.String getFieldString​(org.snpeff.vcf.VcfEntry vcfEntry)
        Get a field from VcfEntry
        Overrides:
        getFieldString in class FieldSub
      • getName

        public java.lang.String getName()
        Overrides:
        getName in class Field
      • getReturnType

        public org.snpeff.vcf.VcfInfoType getReturnType​(org.snpeff.vcf.VcfEntry vcfEntry)
      • init

        protected void init()
      • toString

        public java.lang.String toString()
        Overrides:
        toString in class FieldSub