Class TestCasesFilterChrPos


  • public class TestCasesFilterChrPos
    extends java.lang.Object
    Test cases for SnpSift filterChrPos
    Author:
    pcingola
    • Field Summary

      Fields 
      Modifier and Type Field Description
      static boolean debug  
      protected java.lang.String[] defaultExtraArgs  
      static boolean verbose  
    • Method Summary

      All Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      protected java.lang.String[] argsList​(java.lang.String chrPosFileName, java.lang.String vcfFileName, java.lang.String[] extraArgs)  
      void filter​(java.lang.String dbFileName, java.lang.String fileName, int expectedCount)  
      java.util.List<org.snpeff.vcf.VcfEntry> filter​(java.lang.String chrPosFileName, java.lang.String vcfFileName, java.lang.String[] extraArgs, int expectedCount)
      Filter
      void test_01()  
      void test_02()  
      void test_03()  
      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
    • Field Detail

      • debug

        public static boolean debug
      • verbose

        public static boolean verbose
      • defaultExtraArgs

        protected java.lang.String[] defaultExtraArgs
    • Constructor Detail

      • TestCasesFilterChrPos

        public TestCasesFilterChrPos()
    • Method Detail

      • argsList

        protected java.lang.String[] argsList​(java.lang.String chrPosFileName,
                                              java.lang.String vcfFileName,
                                              java.lang.String[] extraArgs)
      • filter

        public void filter​(java.lang.String dbFileName,
                           java.lang.String fileName,
                           int expectedCount)
      • filter

        public java.util.List<org.snpeff.vcf.VcfEntry> filter​(java.lang.String chrPosFileName,
                                                              java.lang.String vcfFileName,
                                                              java.lang.String[] extraArgs,
                                                              int expectedCount)
        Filter
      • test_01

        public void test_01()
      • test_02

        public void test_02()
      • test_03

        public void test_03()