Class AnnotateVcfDbSorted


  • public class AnnotateVcfDbSorted
    extends AnnotateVcfDb
    Annotate using a VCF "database" Note: Assumes that the VCF database file is sorted. Each VCF entry should be sorted according to position. Chromosome order does not matter (e.g. all entries for chr10 can be before entries for chr2). But entries for the same chromosome should be together.
    Author:
    pcingola
    • Constructor Detail

      • AnnotateVcfDbSorted

        public AnnotateVcfDbSorted​(java.lang.String dbFileName,
                                   int maxBlockSize)